Please type help("INSTALL") or help("install.packages") in R for information on how to install packages from this directory. The manual R Installation and Administration (also contained in the R base sources) explains the process in detail.
CRAN Task Views allow you to browse packages by topic and provide tools to automatically install all packages for special areas of interest. Currently, 22 views are available.
All packages are tested regularly on machines running Debian GNU/Linux. Packages are also checked under MacOS X and Windows, but only at the day the package appears on CRAN.
The results are summarized in the check summary (some timings are also available). Additional details for Windows checking and building can be found in the Windows check summary.
The manual Writing R Extensions (also contained in the R base sources) explains how to write new packages and how to contribute them to CRAN.
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
| aaMI | Mutual information for protein sequence alignments |
| abind | Combine multi-dimensional arrays |
| AcceptanceSampling | Creation and evaluation of Acceptance Sampling Plans |
| accuracy | Tools for testing and improving accuracy of statistical results |
| acepack | ace() and avas() for selecting regression transformations |
| actuar | Actuarial functions |
| ada | Performs boosting algorithms for a binary response |
| adabag | Applies Adaboost.M1 and Bagging |
| ADaCGH | Analysis of data from aCGH experiments |
| adapt | adapt -- multidimensional numerical integration |
| AdaptFit | Adaptive Semiparametic Regression |
| ade4 | Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences |
| ade4TkGUI | ade4 Tcl/Tk Graphical User Interface |
| adegenet | adegenet: a R package for the multivariate analysis of genetic markers |
| adehabitat | Analysis of habitat selection by animals |
| adimpro | Adaptive Smoothing of Digital Images |
| adk | Anderson-Darling K-Sample Test and Combinations of Such Tests |
| adlift | An adaptive lifting scheme algorithm |
| AdMit | Adaptive Mixture of Student-t distributions |
| ads | Spatial point patterns analysis |
| AER | Applied Econometrics with R |
| agce | analysis of growth curve experiments |
| agreement | agreement: Analyse the agreement between two measurement methods |
| agricolae | Statistical Procedures for Agricultural Research |
| agsemisc | Miscellaneous plotting and utility functions |
| AIS | Tools to look at the data ("Ad Inidicia Spectata") |
| akima | Interpolation of irregularly spaced data |
| AlgDesign | AlgDesign |
| allelic | A fast, unbiased and exact allelic exact test |
| alr3 | Methods and data to accompany Applied Linear Regression 3rd edition |
| ALS | multivariate curve resolution alternating least squares (MCR-ALS) |
| amap | Another Multidimensional Analysis Package |
| amei | Adaptive Management of Epidemiological Interventions |
| Amelia | Amelia II: A Program for Missing Data |
| AMORE | A MORE flexible neural network package |
| anacor | Simple and Canonical Correspondence Analysis |
| analogue | Analogue and weighted averaging methods for palaeoecology |
| AnalyzeFMRI | Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format |
| anapuce | Tools for microarray data analysis |
| animation | Demonstrate Animations in Statistics |
| anm | Analog model for downscaling |
| aod | Analysis of Overdispersed Data |
| ape | Analyses of Phylogenetics and Evolution |
| aplpack | Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, .. |
| apsrtable | apsrtable model-output formatter for social science |
| apTreeshape | Analyses of Phylogenetic Treeshape |
| archetypes | Archetypal Analysis |
| ArDec | Time series autoregressive-based decomposition |
| ARES | Allelic richness estimation, with extrapolation beyond the sample size |
| argosfilter | Argos locations filter |
| arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |
| arrayImpute | Missing imputation for microarray data |
| arrayMissPattern | Exploratory analysis of Missing patterns for microarray data |
| ars | Adaptive Rejection Sampling |
| arules | Mining Association Rules and Frequent Itemsets |
| arulesSequences | Mining frequent sequences |
| ash | David Scott's ASH routines |
| aspace | A collection of functions for estimating centrographic statistcs and computational geometries from spatial point patterns |
| assist | A Suite of S-Plus Functions Implementing Smoothing Splines |
| aster | Aster Models |
| asuR | Advanced statistics using R |
| asympTest | Asymptotic statistic |
| asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |
| audio | Audio Interface for R |
| aws | Adaptive Weights Smoothing |
| aylmer | A generalization of Fisher's exact test |
| BACCO | Bayesian Analysis of Computer Code Output |
| backfitRichards | Backfitted independent values of Richards curves |
| backtest | Exploring portfolio-based conjectures about financial instruments |
| BaM | Functions and datasets for books by Jeff Gill |
| BARD | Better Automated ReDistricting |
| bark | Bayesian Additive Regresssion Kernels |
| bayesCGH | Bayesian analysis of array CGH data |
| bayescount | Bayesian analysis of count distributions with JAGS |
| bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |
| bayesm | Bayesian Inference for Marketing/Micro-econometrics |
| bayesmix | Bayesian Mixture Models with JAGS |
| bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |
| BayesTree | Bayesian Methods for Tree Based Models |
| BayesValidate | BayesValidate Package |
| BayHaz | R Functions for Bayesian Hazard Rate Estimation |
| BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |
| BB | Solving and optimizing large-scale nonlinear systems |
| bbmle | Tools for general maximum likelihood estimation |
| BCE | Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |
| Bchron | Create chronologies based on radiocarbon and non-radiocarbon dated depths |
| bcp | A Package for Performing a Bayesian Analysis of Change Point Problems |
| beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |
| bear | Average bioequivalence and bioavailability data analysis tool |
| benchden | 28 benchmark densities from Berlinet/Devroye (1994) |
| bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |
| betaper | Distance decay of similarity among biological inventories in the face of taxonomic uncertainty |
| betareg | Beta Regression |
| Bhat | General likelihood exploration |
| BHH2 | Useful Functions for Box, Hunter and Hunter II |
| BiasedUrn | Biased Urn model distributions |
| biclust | BiCluster Algorithms |
| bicreduc | Reduction algorithm for the NPMLE for the distribution function of bivariate interval-censored data |
| bifactorial | Inferences for bi- and trifactorial trial designs |
| biglm | bounded memory linear and generalized linear models |
| bigmemory | Manage massive matrices in R using C++, with UNIX support for shared memory |
| bim | Bayesian Interval Mapping Diagnostics |
| bindata | Generation of Artificial Binary Data |
| binGroup | Evaluation and experimental design for binomial group testing |
| binMto | Asymptotic simultaneous confdence intervals for many-to-one comparisons of proportions |
| binom | Binomial Confidence Intervals For Several Parameterizations |
| Biodem | Biodemography functions |
| BiodiversityR | GUI for biodiversity and community ecology analysis |
| BioIDMapper | Mapping between BioIDs |
| bio.infer | Compute biological inferences |
| biopara | Self-contained parallel system for R |
| biOps | Image processing and analysis |
| biOpsGUI | GUI for Basic image operations |
| bipartite | Visualises bipartite networks and calculates some ecological indices |
| BiplotGUI | Interactive Biplots in R |
| birch | Dealing with very large datasets using BIRCH |
| bise | Auxiliary functions for phenological data analysis |
| bit | A class for vectors of 1-bit booleans |
| bitops | Functions for Bitwise operations |
| bivpois | Bivariate Poisson Models Using The EM Algorithm |
| BLCOP | Black-Litterman and copula-opinion pooling frameworks |
| blighty | United Kingdom coastlines |
| blockmodeling | An R package for Generalized and classical blockmodeling of valued networks |
| blockrand | Randomization for block random clinical trials |
| blockTools | Block, assign, and diagnose potential interference in randomized experiments |
| BMA | Bayesian Model Averaging |
| bmd | Benchmark dose analysis for dose-response data |
| bnlearn | Bayesian network structure learning |
| boa | Bayesian Output Analysis Program (BOA) for MCMC |
| Bolstad | Bolstad functions |
| boolean | Boolean Binary Response Models |
| boost | Boosting Methods for Real and Simulated Data |
| boot | Bootstrap R (S-Plus) Functions (Canty) |
| BootCL | Bootstrapping test for chromosomal localization |
| BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |
| bootStepAIC | Bootstrap stepAIC |
| bootstrap | Functions for the Book "An Introduction to the Bootstrap" |
| bpca | Biplot of Multivariate Data Based on Principal Components Analysis |
| BPHO | Bayesian Prediction with High-order Interactions |
| bqtl | Bayesian QTL mapping toolkit |
| BradleyTerry | Bradley-Terry models |
| brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory |
| brew | Templating Framework for Report Generation |
| brglm | Bias reduction in binomial-response GLMs |
| Brobdingnag | Very large numbers in R |
| bs | Package for the Birnbaum-Saunders distribution |
| BSagri | Statistical methods for safety assessment in agricultural field trials |
| BSDA | Basic Statistics and Data Analysis |
| BsMD | Bayes Screening and Model Discrimination |
| bspec | Bayesian spectral inference |
| bvls | The Stark-Parker algorithm for bounded-variable least squares |
| ca | Simple, Multiple and Joint Correspondence Analysis |
| cacher | Tools for caching and distributing statistical analyses |
| cacheSweave | Tools for caching Sweave computations |
| CADFtest | This package performs the CADF unit root test proposed in Hansen (1995) |
| CADStat | Provides a GUI to several statistical methods useful for causal assessment |
| Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output |
| cairoDevice | Cairo-based cross-platform antialiased graphics device driver |
| calib | Statistical tool for calibration of plate based bioassays |
| calibrate | Calibration of Biplot Axes |
| caMassClass | Processing & Classification of Protein Mass Spectra (SELDI) Data |
| candisc | Generalized Canonical Discriminant Analysis |
| car | Companion to Applied Regression |
| CarbonEL | Carbon Event Loop |
| caret | Classification and Regression Training |
| caretLSF | Classification and Regression Training LSF Style |
| caretNWS | Classification and Regression Training in Parallel Using NetworkSpaces |
| cat | Analysis of categorical-variable datasets with missing values |
| catmap | Case-control And Tdt Meta-Analysis Package |
| caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc |
| catspec | Special models for categorical variables |
| cba | Clustering for Business Analytics |
| CCA | Canonical correlation analysis |
| ccgarch | Conditional Correlation GARCH models |
| cclust | Convex Clustering Methods and Clustering Indexes |
| CDNmoney | Components of Canadian Monetary and Credit Aggregates |
| CellularAutomaton | One-Dimensional Cellular Automata |
| celsius | Retrieve Affymetrix microarray measurements and metadata from Celsius |
| cem | CEM: Software for Coarsened Exact Matching |
| cfa | Analysis of configuration frequencies (CFA) |
| cggd | Continuous Generalized Gradient Descent |
| cgh | Microarray CGH analysis using the Smith-Waterman algorithm |
| cghFLasso | Detecting hot spot on CGH array data with fused lasso regression |
| CGIwithR | CGI Programming in R |
| ChainLadder | Mack-, Bootstrap and Munich-chain-ladder methods for insurance claims reserving |
| changeLOS | Change in LOS |
| cheb | Discrete Linear Chebyshev Approximation |
| chemCal | Calibration functions for analytical chemistry |
| chemometrics | Multivariate Statistical Analysis in Chemometrics |
| choplump | Choplump tests |
| chplot | Augmented Convex Hull Plots |
| chron | Chronological objects which can handle dates and times |
| CHsharp | Choi and Hall Clustering in 3d |
| cir | Nonparametric estimation of monotone functions via isotonic regression and centered isotonic regression |
| CircStats | Circular Statistics, from "Topics in circular Statistics" (2001) |
| circular | Circular Statistics |
| clac | Clust Along Chromosomes, a method to call gains/losses in CGH array data |
| classGraph | Construct Graphs of S4 Class Hierarchies |
| classifly | Explore classification models in high dimensions |
| classInt | Choose univariate class intervals |
| classPP | Projection Pursuit for supervised classification |
| climatol | Some Tools for Climatology |
| clim.pact | Climate analysis and empirical-statistical downscaling (ESD) package for monthly and daily data |
| clinfun | Clinical Trial Design and Data Analysis Functions |
| clue | Cluster ensembles |
| cluster | Cluster Analysis Extended Rousseeuw et al |
| clusterfly | Explore clustering interactively using R and GGobi |
| clusterGeneration | random cluster generation (with specified degree of separation) |
| clusterRepro | Reproducibility of gene expression clusters |
| clusterSim | Searching for optimal clustering procedure for a data set |
| clustTool | GUI for clustering data with spatial information |
| clustvarsel | Variable Selection for Model-Based Clustering |
| clv | Cluster Validation Techniques |
| clValid | Validation of Clustering Results |
| cmprsk | Subdistribution Analysis of Competing Risks |
| cobs | COBS -- Constrained B-splines (Sparse matrix based) |
| cobs99 | Constrained B-splines -- outdated 1999 version |
| CoCo | Graphical modelling by CoCo |
| cocorresp | Co-correspondence analysis methods |
| coda | Output analysis and diagnostics for MCMC |
| codetools | Code Analysis Tools for R |
| coin | Conditional Inference Procedures in a Permutation Test Framework |
| colorRamps | Builds color tables |
| colorspace | Color Space Manipulation |
| combinat | combinatorics utilities |
| CombMSC | Combined Model Selection Criteria |
| ComPairWise | Compare phylogenetic or population genetic data alignments |
| compare | Comparing Objects for Differences |
| CompetingRiskFrailty | Competing Risk Model with Frailties for Right Censored Survival Data |
| compHclust | Complementary hierarchical clustering |
| compoisson | Conway-Maxwell-Poisson Distribution |
| compositions | Compositional Data Analysis |
| compOverlapCorr | Comparing overlapping correlation coefficients |
| concor | Concordance |
| concord | Concordance and reliability |
| conf.design | Construction of factorial designs |
| connectedness | Find disconnected subsets for a two-way classification |
| Containers | Object-Oriented Data Structures for R |
| contfrac | Continued fractions |
| contrast | A collection of contrast methods |
| ConvergenceConcepts | Seeing convergence concepts in action |
| convexHaz | Nonparametric MLE/LSE of convex hazard |
| copas | Statistical methods to model and adjust for bias in meta-analysis |
| copula | Multivariate dependence with copulas |
| corcounts | Generate correlated count random variables |
| corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
| corpora | Statistics for corpus linguists |
| CORREP | Multivariate Correlation Estimator and Statistical Inference Procedures |
| corrgram | Plot a correlogram |
| corrperm | Permutation Tests of Correlation with Repeated Measurements |
| covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |
| CoxBoost | Cox survival models by likelihood based boosting |
| coxphf | Cox regression with Firth's penalized likelihood |
| coxphw | Weighted Cox regression |
| coxrobust | Robust Estimation in Cox Model |
| COZIGAM | Constrained Zero-Inflated Generalized Additive Model |
| CPE | Concordance Probability Estimates in Survival Analysis |
| cramer | Multivariate nonparametric Cramer-Test for the two-sample-problem |
| crank | Completing ranks |
| crawl | Fit continuous-time correlated random walk models for animal movement data |
| CreditMetrics | Functions for calculating the CreditMetrics risk model |
| crossdes | Design and Randomization in Crossover Studies |
| crosshybDetector | Detection of cross-hybridization events in microarray experiments |
| crq | Censored Quantile Regression |
| cslogistic | Conditionally Specified Logistic Regression |
| CTFS | The CTFS Large Plot Forest Dynamics Analyses |
| cts | Continuous Time Autoregressive Models |
| CTT | Classical Test Theory Functions |
| ctv | CRAN Task Views |
| curvetest | Test the equality of two curves, or one curve with 0 |
| CvM2SL1Test | L1-version of Cramer-von Mises Two Sample Tests |
| CvM2SL2Test | Cramer-von Mises Two Sample Tests |
| CVThresh | Level-Dependent Cross-Validation Thresholding |
| cwhmisc | CWH's functions for Maths, Plotting, Printing, Statistics, Strings, and Tools |
| cyclones | Cyclone identification |
| DAAG | Data Analysis And Graphics |
| DAAGbio | Data Sets and Functions, for demonstrations with expression arrays |
| DAAGxtras | Data Sets and Functions, supplementary to DAAG |
| dataframes2xls | dataframes2xls writes data frames to xls files |
| data.table | Extension of data.frame. i and j expressions, keys and binary search |
| date | Functions for handling dates |
| Davies | The Davies quantile function |
| DBI | R Database Interface |
| dblcens | Compute the NPMLE of distribution from doubly censored data |
| DCluster | Functions for the detection of spatial clusters of diseases |
| ddesolve | Solver for Delay Differential Equations |
| DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |
| ddst | Data driven smooth test |
| DEA | Data Envelopment Analysis |
| deal | Learning Bayesian Networks with Mixed Variables |
| debug | MVB's debugger for R |
| Defaults | Create Global Function Defaults |
| degreenet | Models for Skewed Count Distributions Relevant to Networks |
| deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |
| delt | Estimation of multivariate densities with adaptive histograms |
| demogR | Analysis of age-structured demographic models |
| denpro | Visualization of multivariate, functions, sets, and data |
| denstrip | Density strips and other methods for compactly illustrating distributions |
| DEoptim | Differential Evolution Optimization |
| depmix | Dependent Mixture Models |
| depmixS4 | Dependent Mixture Models |
| depth | Depth functions tools for multivariate analysis |
| DescribeDisplay | R interface to DescribeDisplay (GGobi plugin) |
| Design | Design Package |
| desirability | Desirabiliy Function Optimization and Ranking |
| deSolve | General solvers for ordinary differential equations (ODE) and for differential algebraic equations (DAE) |
| Devore5 | Data sets from Devore's "Prob and Stat for Eng (5th ed)" |
| Devore6 | Data sets from Devore's "Prob and Stat for Eng (6th ed)" |
| Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |
| dfcrm | Dose-finding by the continual reassessment method |
| dglm | Double generalized linear models |
| DiagnosisMed | Diagnostic test accuracy evaluation for medical professionals |
| diagram | Functions for visualising simple graphs (networks), plotting flow diagrams |
| diamonds | Analysis and sampling grids from diamond partitions |
| dice | Calculate probabilities of various dice-rolling events |
| dichromat | Color schemes for dichromats |
| DICOM | Import medical imaging data using the DICOM Standard |
| DierckxSpline | R companion to "Curve and Surface Fitting with Splines" |
| diffractometry | Baseline identification and peak decomposition for x-ray diffractograms |
| digest | Create cryptographic hash digests of R objects |
| diptest | Hartigan's dip test statistic for unimodality - corrected code |
| dirichlet | Dirichlet model of consumer buying behavior for marketing research |
| dispmod | Dispersion models |
| distr | Object orientated implementation of distributions |
| distrDoc | Documentation for packages distr, distrEx, distrSim, distrTEst |
| distrEx | Extensions of package distr |
| distributions | Probability distributions based on TI-83 Plus |
| distrMod | Object orientated implementation of probability models |
| distrSim | Simulation classes based on package distr |
| distrTeach | Extensions of package distr for teaching Stochastics/Statistics in secondary school |
| distrTEst | Estimation and Testing classes based on package distr |
| divagis | Provides tools for quality checks of georeferenced plant species accessions |
| diveMove | Dive analysis and calibration |
| dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |
| dlmap | Detection Localization Mapping for QTL |
| doBy | Groupwise computations of summary statistics and other utilities |
| dplR | Dendrochronology Program Library in R |
| DPpackage | Bayesian Nonparametric and Semiparametric Analysis |
| dprep | Data preprocessing and visualization functions for classification |
| dr | Methods for dimension reduction for regression |
| drc | Analysis of dose-response curves |
| drfit | Dose-response data evaluation |
| drm | Regression and association models for repeated categorical data |
| dse | Bundle of dse1, dse2 |
| dti | DTI Analysis |
| dtt | Discrete Trigonometric Transforms |
| dtw | Dynamic Time Warping algorithms |
| dyn | Time Series Regression |
| dynamicGraph | dynamicGraph |
| dynamicTreeCut | Methods for detection of clusters in hierarchical clustering dendrograms |
| dynamo | Dynamic Models |
| dynlm | Dynamic Linear Regression |
| e1071 | Misc Functions of the Department of Statistics (e1071), TU Wien |
| earth | Multivariate Adaptive Regression Spline Models |
| eba | Elimination-By-Aspects (EBA) Models |
| EbayesThresh | Empirical Bayes thresholding and related methods |
| Ecdat | Data sets for econometrics |
| ecespa | Functions for spatial point pattern analysis |
| eco | R Package for Ecological Inference in 2x2 Tables |
| ecodist | Dissimilarity-based functions for ecological analysis |
| ecolMod | "A practical guide to ecological modelling - using R as a simulation platform" |
| EDR | Estimation of the effective dimension reduction (EDR) space |
| EffectiveDose | Estimation of the Effective Dose including Bootstrap confidence intervals |
| effects | Effect Displays for Linear, Generalized Linear, Multinomial-Logit, and Proportional-Odds Logit Models |
| eha | Event History Analysis |
| eigenmodel | Semiparametric factor and regression models for symmetric relational data |
| eiPack | eiPack: Ecological Inference and Higher-Dimension Data Management |
| elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |
| ElemStatLearn | Data sets, functions and examples from the book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman |
| ellipse | Functions for drawing ellipses and ellipse-like confidence regions |
| elliptic | elliptic functions |
| elrm | Exact Logistic Regression via MCMC |
| EMC | Evolutionary Monte Carlo (EMC) algorithm |
| EMCC | Evolutionary Monte Carlo (EMC) methods for clustering |
| EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |
| emdbook | Ecological models and data (book support) |
| emme2 | Read and Write to an EMME/2 databank |
| empiricalBayes | Bundle of HighProbability, localFDR |
| emplik | Empirical likelihood ratio for censored/truncated data |
| emu | Interface to the Emu Speech Database System |
| EMV | Estimation of Missing Values for a Data Matrix |
| energy | E-statistics (energy statistics) |
| ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |
| entropy | Entropy and Mutual Information Estimation |
| Epi | A package for statistical analysis in epidemiology |
| epibasix | Elementary Epidemiological Functions for a Graduate Epidemiology\Biostatistics Course |
| epicalc | Epidemiological calculator |
| epiR | Functions for analysing epidemiological data |
| epitools | Epidemiology Tools |
| eqtl | Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis |
| equivalence | Provides tests and graphics for assessing tests of equivalence |
| ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |
| eRm | Extended Rasch Modeling |
| ETC | Tests and simultaneous confidence intervals for equivalence to control |
| etm | Empirical Transition Matrix |
| evd | Functions for extreme value distributions |
| evdbayes | Bayesian Analysis in Extreme Value Theory |
| EVER | Estimation of Variance by Efficient Replication |
| evir | Extreme Values in R |
| exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |
| exactmaxsel | Maximally selected statistics for binary response variables - Exact methods |
| exactRankTests | Exact Distributions for Rank and Permutation Tests |
| exams | Automatic Generation of Simple (Statistical) Exams |
| experiment | experiment: R package for designing and analyzing randomized experiments |
| expert | Modeling without data using expert opinion |
| extRemes | Extreme value toolkit |
| FactoClass | Combination of Factorial Methods and Cluster Analysis |
| FactoMineR | Factor Analysis and Data Mining with R |
| Fahrmeir | Data from the book "Multivariate Statistical Modelling Based on Generalized Linear Models", first edition, by Ludwig Fahrmeir and Gerhard Tutz |
| FAiR | Factor Analysis in R |
| fame | Interface for FAME time series database |
| far | Modelization for Functional AutoRegressive processes |
| faraway | Functions and datasets for books by Julian Faraway |
| fArma | ARMA Time Series Modelling |
| fAsianOptions | EBM and Asian Option Valuation |
| fAssets | Rmetrics - Assets Selection and Modelling |
| fastICA | FastICA Algorithms to perform ICA and Projection Pursuit |
| fBasics | Rmetrics - Markets and Basic Statistics |
| fbati | Gene by Environment Interaction Tests |
| fBonds | Bonds and Interest Rate Models |
| fCalendar | Chronological and Calendarical Objects |
| fCopulae | Rmetrics - Dependence Structures with Copulas |
| fda | Functional Data Analysis |
| fdim | Functions for calculating fractal dimension |
| fdrtool | Estimation and Control of (Local) False Discovery Rates |
| feature | Feature significance for multivariate kernel density estimation |
| fEcofin | Economic and Financial Data Sets |
| femmeR | Output analysis of FEMME model results |
| fExoticOptions | Exotic Option Valuation |
| fExtremes | Rmetrics - Extreme Financial Market Data |
| ff | memory-efficient storage of large atomic vectors and arrays on disk and fast access functions |
| ffmanova | Fifty-fifty MANOVA |
| fgac | Generalized Archimedean Copula |
| fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |
| FGN | Fractional Gaussian Noise Model Fitting |
| fgui | Function GUI |
| fields | Tools for spatial data |
| FieldSim | Random fields simulations |
| filehash | Simple key-value database |
| filehashSQLite | Simple key-value database using SQLite |
| fImport | Rmetrics - Economic and Financial Data Import |
| financial | Solving financial problems in R |
| fingerprint | Functions to operate on binary fingerprint data |
| FinTS | Companion to Tsay (2005) Analysis of Financial Time Series |
| FitAR | Subset AR Model Fitting |
| FITSio | FITS (Flexible Image Transport System) utilities |
| FKBL | fuzzy knowledge base learning |
| flexclust | Flexible Cluster Algorithms |
| flexmix | Flexible Mixture Modeling |
| Flury | Data Sets from Flury, 1997 |
| fmri | Analysis of fMRI experiments |
| fMultivar | Multivariate Market Analysis |
| fNonlinear | Nonlinear and Chaotic Time Series Modelling |
| foba | greedy variable selection |
| fOptions | Basics of Option Valuation |
| forecasting | Bundle of forecast, fma, Mcomp, expsmooth |
| foreign | Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase, .. |
| forensic | Statistical Methods in Forensic Genetics |
| fork | R functions for handling multiple processes |
| Formula | Extended Formulas |
| fortunes | R Fortunes |
| forward | Forward search |
| fossil | Palaeoecological and Palaeogeographical Analysis Tools |
| fpc | Fixed point clusters, clusterwise regression and discriminant plots |
| fpca | Restricted MLE for Functional Principal Components Analysis |
| fPortfolio | Rmetrics - Portfolio Selection and Optimization |
| fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |
| FracSim | Simulation of Lévy motions |
| fractal | Insightful Fractal Time Series Modeling and Analysis |
| frailtypack | Frailty models using maximum penalized likelihood estimation |
| fRegression | Regression Based Decision and Prediction |
| FrF2 | Package for analysing Fractional Factorial designs with 2-level factors |
| frontier | Stochastic Frontier Analysis |
| fSeries | Financial Time Series Objects |
| fso | Fuzzy Set Ordination |
| FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data |
| ftnonpar | Features and Strings for Nonparametric Regression |
| fTrading | Technical Trading Analysis |
| fts | R interface to tslib (a time series library in c++) |
| FunCluster | Functional Profiling of Microarray Expression Data |
| fUnitRoots | Trends and Unit Roots |
| FunNet | Integrative Functional Analysis of Transcriptional Networks |
| fUtilities | Function Utilities |
| fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |
| fuzzyOP | Fuzzy numbers and the main mathematical operations |
| fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |
| fxregime | Exchange Rate Regime Analysis |
| G1DBN | A package performing Dynamic Bayesian Network inference |
| gafit | Genetic Algorithm for Curve Fitting |
| gam | Generalized Additive Models |
| gamair | Data for "GAMs: An Introduction with R" |
| GAMBoost | Generalized linear and additive models by likelihood based boosting |
| gamlss | Generalized Additive Models for Location Scale and Shape |
| gamlss.cens | Fitting an interval response variable using gamlss.family distributions |
| gamlss.dist | Extra distributions to be used for GAMLSS modelling |
| gamlss.mx | A GAMLSS add on package for fitting mixture distributions |
| gamlss.nl | Fitting non linear parametric GAMLSS models |
| gamlss.tr | Generating and fitting truncated (gamlss.family) distributions |
| gap | Genetic analysis package |
| gbev | Gradient Boosted Regression Trees with Errors-in-Variables |
| gbm | Generalized Boosted Regression Models |
| gbs | Package for Generalized Birnbaum-Saunders Distributions |
| gcl | Compute a fuzzy rules or tree classifier from data |
| gclus | Clustering Graphics |
| gcmrec | General class of models for recurrent event data |
| gdata | Various R programming tools for data manipulation |
| g.data | Delayed-Data Packages |
| GDD | GD device for creating bitmap graphics as jpeg, png or gif files using gd library |
| gee | Generalized Estimation Equation solver |
| geepack | Generalized Estimating Equation Package |
| geiger | Analysis of evolutionary diversification |
| GenABEL | genome-wide SNP association analysis |
| genalg | R Based Genetic Algorithm |
| gene2pathway | Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures |
| GeneCycle | Identification of Periodically Expressed Genes |
| GeneF | Package for Generalized F-statistics |
| Geneland | Simulation and MCMC inference of structure from genetic data |
| GeneNet | Modeling and Inferring Gene Networks |
| GeneNT | Relevance or Dependency network and signaling pathway discovery |
| genetics | Population Genetics |
| GeneTS | Microarray Time Series and Network Analysis |
| GenKern | Functions for generating and manipulating kernel density estimates |
| GEOmap | Topographic and Geologic Mapping |
| geomapdata | Data for topographic and Geologic Mapping |
| geometry | Mesh generation and surface tesselation |
| geonames | Interface to www.geonames.org web service |
| geoR | Analysis of geostatistical data |
| geoRglm | geoRglm - a package for generalised linear spatial models |
| GeoXp | Interactive exploratory spatial data analysis |
| geozoo | Zoo of Geometric Objects |
| getopt | C-like getopt behavior |
| GExMap | R functions for analysis genomic distribution of genes lists produced by transcriptomic studies |
| ggm | Graphical Gaussian Models |
| ggplot | An implementation of the Grammar of Graphics in R |
| ggplot2 | An implementation of the Grammar of Graphics |
| ghyp | A package on the generalized hyperbolic distribution and its special cases |
| gibbs.met | Naive Gibbs Sampling with Metropolis Steps |
| GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |
| giRaph | The giRaph package for graph representation in R |
| glasso | Graphical lasso- estimation of Gaussian graphical models |
| gld | Estimation and use of the generalised (Tukey) lambda distribution |
| GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Discretised and Maximum Likelihood Methods |
| gllm | Generalised log-linear model |
| glmc | Fitting Generalized Linear Models Subject to Constraints |
| glmmAK | Generalized Linear Mixed Models |
| glmmBUGS | Generalised Linear Mixed Models with WinBUGS |
| glmmML | Generalized linear models with clustering |
| glmnet | Lasso and elastic-net regularized generalized linear models |
| glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |
| glpk | GNU Linear Programming Kit |
| gmaps | Wrapper and auxilliary functions for maps package to work with grid graphics system |
| gmm | Generalized Method of Moments and Generalized Empirical Likelihood |
| gmodels | Various R programming tools for model fitting |
| gmp | Multiple Precision Arithmetic |
| gmt | Interface between GMT map-making software and R |
| gmvalid | Validation of graphical models |
| gnm | Generalized Nonlinear Models |
| gnomeGUI | GNOME Console for R |
| goalprog | Weighted and lexicographical goal programming and optimization |
| GOSim | Computation of functional similarities between GO terms and gene products; GO enrichement analysis |
| GPArotation | GPA Factor Rotation |
| gpclib | General Polygon Clipping Library for R |
| gplots | Various R programming tools for plotting data |
| gpls | Classification using generalized partial least squares |
| grade | Grade |
| gRain | Graphical Independence Networks |
| granova | Graphical Analysis of Variance |
| graph | graph: A package to handle graph data structures |
| graphicsQC | Quality Control for Graphics in R |
| grasp | Generalized Regression Analysis and Spatial Prediction for R |
| GRASS | Interface between GRASS 5.0 geographical information system and R |
| gRbase | A package for graphical modelling in R |
| gRc | Inference in Graphical Gaussian Models with Edge and Vertex Symmetries |
| gregmisc | Greg's Miscellaneous Functions |
| gridBase | Integration of base and grid graphics |
| GridR | Executes functions on remote hosts, clusters or grids |
| grImport | Importing Vector Graphics |
| grnnR | A Generalized Regression Neural Network |
| grouped | Regression Analysis of Grouped and Coarse Data |
| GroupSeq | Performing computations related to group sequential designs |
| grplasso | Fitting user specified models with Group Lasso penalty |
| grpreg | Regularization paths for regression models with grouped covariates |
| GSA | Gene set analysis |
| gsarima | Two functions for Generalized SARIMA time series simulation |
| gsl | wrapper for the Gnu Scientific Library |
| GSM | Gamma Shape Mixture |
| gss | General Smoothing Splines |
| gstat | geostatistical modelling, prediction and simulation |
| gsubfn | Utilities for strings and function arguments |
| gtm | Generative topographic mapping |
| gtools | Various R programming tools |
| gumbel | Gumbel copula |
| gvlma | Global Validation of Linear Models Assumptions |
| gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |
| gWidgetsRGtk2 | Toolkit implementation of gWidgets for RGtk2 |
| gWidgetsrJava | Toolkit implementation of gWidgets for rJava |
| gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |
| gWidgetsWWW | Toolkit implementation of gWidgets for www |
| hapassoc | Inference of trait associations with SNP haplotypes and other attributes using the EM Algorithm |
| HAPim | HapIM |
| haplo.ccs | Estimate Haplotype Relative Risks in Case-Control Data |
| haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |
| hapsim | Haplotype Data Simulation |
| HardyWeinberg | Graphical tests for Hardy-Weinberg equilibrium |
| hbim | Hill/Bliss Independence Model for Combination Vaccines |
| hddplot | Use known groups in high-dimensional data to derive scores for plots |
| hdeco | Hierarchical DECOmposition of Entropy for Categorical Map Comparisons |
| hdf5 | HDF5 |
| hdrcde | Highest density regions and conditional density estimation |
| heatmap.plus | Heatmap with more sensible behavior |
| helloJavaWorld | Hello Java World |
| heplots | Visualizing Tests in Multivariate Linear Models |
| hett | Heteroscedastic t regression |
| hexbin | Hexagonal Binning Routines |
| hexView | Viewing Binary Files |
| HFWutils | csv import, csv export, garbage collection,string matching and passing by reference |
| HH | Statistical Analysis and Data Display: Heiberger and Holland |
| HI | Simulation from distributions supported by nested hyperplanes |
| HiddenMarkov | Hidden Markov Models |
| hierfstat | Estimation and tests of hierarchical F-statistics |
| hier.part | Hierarchical Partitioning |
| hints | Provide hints on what to do next |
| hlr | Hidden Logistic Regression |
| Hmisc | Harrell Miscellaneous |
| hmm.discnp | Hidden Markov models with discrete non-parametric observation distributions |
| hoa | Bundle of cond, marg, nlreg, csampling |
| homals | Homogeneity Analysis |
| homtest | Homogeneity tests for Regional Frequency Analysis |
| hopach | Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) |
| hot | Computation on micro-arrays |
| howmany | A lower bound for the number of correct rejections |
| HSAUR | A Handbook of Statistical Analyses Using R |
| hsmm | Hidden Semi Markov Models |
| HTMLapplets | Dynamic visualisation in HTML documents |
| httpRequest | Basic HTTP Request |
| hwde | Models and tests for departure from Hardy-Weinberg equilibrium and independence between loci |
| hwriter | HTML Writer - Outputs R objects in HTML format |
| hybridHclust | Hybrid hierarchical clustering |
| hydrogeo | Groundwater data presentation and interpretation |
| HydroMe | Estimation of Soil Hydraulic Parameters from Experimental Data |
| hydrosanity | Graphical user interface for exploring hydrological time series |
| HyperbolicDist | The hyperbolic distribution |
| hyperdirichlet | A generalization of the Dirichlet distribution |
| hypergeo | The hypergeometric function |
| ibdreg | Regression Methods for IBD Linkage With Covariates |
| IBrokers | R API to Interactive Brokers Trader Workstation |
| ic50 | Standardized high-throughput evaluation of cell-based compound screens |
| ICE | Iterated Conditional Expectation |
| ICEinfer | Incremental Cost-Effectiveness (ICE) Statistical Inference (from Two Unbiased Samples) |
| Icens | NPMLE for Censored and Truncated Data |
| ic.infer | Inequality constrained inference in linear normal situations |
| icomp | ICOMP criterion |
| ICS | Tools for Exploring Multivariate Data via ICS/ICA |
| ICSNP | Tools for Multivariate Nonparametrics |
| identity | Jacquard Condensed Coefficients of Identity |
| IDPmisc | Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch) |
| ifa | Independent Factor Analysis |
| ifs | Iterated Function Systems |
| ifultools | Insightful Research Tools |
| ig | Package for a General Class of Inverse Gaussian Distributions |
| igraph | Routines for simple graphs, network analysis |
| iid.test | iid-test |
| imprProbEst | Minimum distance estimation in an imprecise probability model |
| impute | impute: Imputation for microarray data |
| imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for Imcomplete Data |
| ineq | Measuring inequality, concentration and poverty |
| inetwork | Network Analysis and Plotting |
| inline | Inline C, C++, Fortran function calls from R |
| intcox | Iterated Convex Minorant Algorithm for interval censored event data |
| intervals | Tools for working with points and intervals |
| iplots | iPlots - interactive graphics for R |
| ipptoolbox | IPP Toolbox |
| ipred | Improved Predictors |
| irr | Various Coefficients of Interrater Reliability and Agreement |
| irtoys | Simple interface to the estimation and plotting of IRT models |
| ISA | INTRODUZIONE ALLA STATISTICA APPLICATA con esempi in R |
| ismev | An Introduction to Statistical Modeling of Extreme Values |
| Iso | Functions to perform isotonic regression |
| ISOcodes | Selected ISO codes |
| ISwR | Introductory Statistics with R |
| its | Irregular Time Series |
| ivivc | in vitro-in vivo correlation (IVIVC) modeling |
| JADE | JADE and ICA performance criteria |
| JavaGD | Java Graphics Device |
| JGR | JGR - Java Gui for R |
| jit | Just-in-time compiler for the R language |
| JM | Joint Modelling of Longitudinal and Survival Data |
| JointGLM | Joint Modelling of Mean and Dispersion (outdated, see package JointModeling) |
| JointModeling | Joint Modelling of Mean and Dispersion |
| JudgeIt | JudgeIt |
| kappalab | Non-additive measure and integral manipulation functions |
| Kendall | Kendall rank correlation and Mann-Kendall trend test |
| kerfdr | semi-parametric kernel-based approach to local fdr estimations |
| kernelPop | Spatially explicit population genetic simulations |
| kernlab | Kernel-based Machine Learning Lab |
| KernSmooth | Functions for kernel smoothing for Wand & Jones (1995) |
| kin.cohort | Analysis of kin-cohort studies |
| kinship | mixed-effects Cox models, sparse matrices, and modeling data from large pedigrees |
| kknn | Weighted k-Nearest Neighbors |
| klaR | Classification and visualization |
| klin | Linear equations with Kronecker structure |
| kml | K-Means for Longitudinal data |
| KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |
| knncat | Nearest-neighbor classification with categorical variables |
| knnFinder | Fast Near Neighbour Search |
| knnflex | A more flexible KNN |
| knnTree | k-nn classification with variable selection inside leaves of a tree |
| knorm | Microarray Data From Multiple Biologically Interrelated Experiments |
| kohonen | Supervised and unsupervised self-organising maps |
| ks | Kernel smoothing |
| kst | Knowledge Space Theory |
| kza | Kolmogorov-Zurbenko Adaptive Filters |
| kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |
| kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |
| labdsv | Ordination and Multivariate Analysis for Ecology |
| labstatR | Libreria del Laboratorio di Statistica con R |
| laercio | Duncan test, Tukey test and Scott-Knott test |
| lago | An efficient kernel algorithm for rare target detection and unbalanced classification |
| lancet.iraqmortality | Surveys of Iraq Mortality Published in The Lancet |
| languageR | Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics" |
| lars | Least Angle Regression, Lasso and Forward Stagewise |
| laser | Likelihood Analysis of Speciation/Extinction Rates from Phylogenies |
| lasso2 | L1 constrained estimation aka 'lasso' |
| latentnet | Latent position and cluster models for statistical networks |
| latentnetHRT | Latent position and cluster models for statistical networks |
| lattice | Lattice Graphics |
| latticeExtra | Extra Graphical Utilities Based on Lattice |
| latticist | A graphical user interface for exploratory visualisation |
| lawstat | A R package for biostatistics, public policy and law |
| lazy | Lazy Learning for Local Regression |
| lda.cv | Cross-validation for linear discriminate analysis |
| ldbounds | Lan-DeMets Method for Group Sequential Boundaries |
| ldDesign | Design of experiments for detection of linkage disequilibrium |
| LDheatmap | Graphical display of pairwise linkage disequilibria between SNPs |
| LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |
| leaps | regression subset selection |
| LearnBayes | Functions for Learning Bayesian Inference |
| LearnEDA | Functions for Learning Exploratory Data Analysis |
| lga | Tools for linear grouping analysis (LGA) |
| lgtdl | A set of methods for longitudinal data objects |
| lhs | Latin Hypercube Samples |
| LIM | Linear Inverse Model examples and solution methods |
| limSolve | Solving linear inverse models |
| linprog | Linear Programming / Optimization |
| LIStest | Longest Increasing Subsequence Independence Test |
| ljr | Logistic Joinpoint Regression |
| LLAhclust | Hierarchical clustering of variables or objects based on the likelihood linkage analysis method |
| LLN | Learning with latent networks |
| lme4 | Linear mixed-effects models using S4 classes |
| lmeSplines | lmeSplines |
| LMGene | LMGene Software for Date Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays |
| lmm | Linear mixed models |
| lmodel2 | Model II Regression |
| lmom | L-moments |
| lmomco | L-moments, Trimmed L-moments, L-comoments, and Many Distributions |
| Lmoments | L-moments and quantile mixtures |
| lmtest | Testing Linear Regression Models |
| lnMLE | Logistic-Normal Model for Clustered Binary (Binomial) Data |
| locfdr | Computes local false discovery rates |
| locfit | Local Regression, Likelihood and Density Estimation |
| locpol | Kernel local polinomial regression |
| lodplot | Plot a genome scan |
| LogConcDEAD | Log-concave Density Estimation in Arbitrary Dimensions |
| logcondens | Estimate a Log-Concave Probability Density from iid Observations |
| LogicReg | Logic Regression |
| logilasso | Analysis of sparse contingency tables with penalization approaches |
| logistf | Firth's bias reduced logistic regression |
| loglognorm | Double log normal distribution functions |
| logregperm | Inference in Logistic Regression |
| logspline | Logspline density estimation routines |
| lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |
| longitudinal | Analysis of Multiple Time Course Data |
| longmemo | Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions |
| longRPart | Recursive partitioning of longitudinal data using mixed-effects models |
| LoopAnalyst | A collection of tools to conduct Levins' Loop Analysis |
| LowRankQP | Low Rank Quadratic Programming |
| lpc | Lassoed principal components for testing significance of features |
| lpridge | Local Polynomial (Ridge) Regression |
| lpSolve | Interface to Lp_solve v. 5.5 to solve linear/integer programs |
| lpSolveAPI | Interface to lp_solve 5.5.0.13 |
| lsa | Latent Semantic Analysis |
| lspls | LS-PLS Models |
| lss | the accelerated failure time model to right censored data based on least-squares principle |
| ltm | Latent Trait Models under IRT |
| ltsa | Linear time series analysis |
| luca | Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |
| lvplot | Level value plots for R |
| maanova | Tools for analyzing Micro Array experiments |
| MAclinical | Class prediction based on microarray data and clinical parameters |
| magic | create and investigate magic squares |
| mapdata | Extra Map Databases |
| mapLD | Linkage Disequilibrium Mapping |
| mapproj | Map Projections |
| maps | Draw Geographical Maps |
| maptools | Tools for reading and handling spatial objects |
| maptree | Mapping, pruning, and graphing tree models |
| mAr | Multivariate AutoRegressive analysis |
| marelac | Datasets, constants, conversion factors, utilities for the marine and lacustrine sciences |
| marginalmodelplots | Marginal Model Plots |
| marginTree | marginTree: margin trees for high-dimensional classification |
| MarkedPointProcess | Analysis of Marks of Marked Point Processes |
| MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |
| Matching | Multivariate and Propensity Score Matching with Balance Optimization |
| MatchIt | MatchIt |
| mathgraph | Directed and undirected graphs |
| matlab | MATLAB emulation package |
| Matrix | Sparse and Dense Matrix Classes and Methods |
| matrixcalc | Collection of functions for matrix differential calculus |
| maxLik | Maximum Likelihood Estimation |
| maxstat | Maximally Selected Rank Statistics |
| MBA | Multilevel B-spline Approximation |
| MBESS | MBESS |
| mblm | Median-Based Linear Models |
| mboost | Model-Based Boosting |
| MCAPS | MCAPS data and results |
| MCE | Tools for evaluating Monte Carlo Error |
| mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |
| MChtest | Monte Carlo hypothesis tests with Sequential Stopping |
| mclust | Model-Based Clustering / Normal Mixture Modeling |
| mclust02 | Model-based cluster analysis (older version) |
| mcmc | Markov Chain Monte Carlo |
| MCMCpack | Markov chain Monte Carlo (MCMC) Package |
| mco | Multi criteria optimization algorithms and related functions |
| MCPAN | Multiple comparisons using normal approximation |
| MCPMod | Design and Analysis of Dose-Finding Studies |
| mda | Mixture and flexible discriminant analysis |
| MDD | Minimum Detectable Difference Calculations |
| meboot | Maximum Entropy Bootstrap for Time Series |
| mefa | Multivariate Data Handling in Ecology and Biogeography |
| meifly | Interactive model exploration using GGobi |
| memisc | Tools for Management of Survey Data, Graphics, Programming, Statistics, and Simulation |
| MEMSS | Data sets from Mixed-effects Models in S |
| merror | Accuracy and Precision of Measurements |
| meta | Meta-Analysis |
| Metabonomic | GUI for Metabonomic Analysis |
| MFDA | Model Based Functional Data Analysis |
| mFilter | Miscellaneous time series filters |
| mfp | Multivariable Fractional Polynomials |
| mgcv | GAMs with GCV smoothness estimation and GAMMs by REML/PQL |
| mi | Missing Data Imputation and Model Checking |
| mice | Multivariate Imputation by Chained Equations |
| micEcon | Microeconomics |
| MIfuns | Pharmacometric tools for data preparation, analysis, simulation, and reporting |
| mimR | A package for graphical modelling in R |
| minet | Mutual Information Network Inference |
| minpack.lm | R interface to the Levenberg-Marquardt nonlinear least-squares algorithm found in MINPACK |
| minxent | Entropy Optimization Distributions |
| mirf | MULTIPLE IMPUTATION AND RANDOM FORESTS FOR UNOBSERVABLE PHASE, HIGH-DIMENSIONAL DATA |
| misc3d | Miscellaneous 3D Plots |
| MiscPsycho | Miscellaneous Psychometrics |
| mitools | Tools for multiple imputation of missing data |
| mix | Estimation/multiple Imputation for Mixed Categorical and Continuous Data |
| mixdist | Finite Mixture Distribution Models |
| mixer | random graph clustering |
| mixlow | mixlow method for assessing drug synergism |
| mixPHM | Mixtures of proportional hazard models |
| mixreg | Functions to fit mixtures of regressions |
| mixstock | functions for mixed stock analysis |
| mixtools | Tools for analyzing finite mixture models |
| MKLE | Maximum kernel likelihood estimation |
| MKmisc | Miscellaneous Functions from M. Kohl |
| mlbench | Machine Learning Benchmark Problems |
| mlCopulaSelection | Copula selection and fitting using maximum likelihood |
| MLDA | Methylation Linear Discriminant Analysis (MLDA) |
| MLDS | Maximum Likelihood Difference Scaling |
| MLEcens | Computation of the MLE for bivariate (interval) censored data |
| mlegp | Maximum Likelihood Estimates of Gaussian Processes |
| mlica | Independent Component Analysis using Maximum Likelihood |
| mlmmm | ML estimation under multivariate linear mixed models with missing values |
| mlmRev | Examples from Multilevel Modelling Software Review |
| mlogit | multinomial logit model |
| MMG | Mixture Model on Graphs |
| mmlcr | Mixed-Mode Latent Class Regression |
| mnormt | The multivariate normal and t distributions |
| MNP | R Package for Fitting the Multinomial Probit Model |
| moc | GENERAL NONLINEAR MIXTURES OF CURVES |
| modeest | Mode Estimation -- Chernoff Distribution |